The move was expected to come after a federal appeals court on Friday ruled against Mr. Khalil, who became the face of President Trump’s crackdown on pro-Palestinian protesters.

In recent days, Mayor Zohran Mamdani has taken actions that have made the relationship between his office and some Jewish New York leaders more fraught.

The Port Authority, which said the runway would reopen Saturday, urged holiday travelers to check with their airlines for travel updates.